PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010531479.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family DBB
Protein Properties Length: 189aa    MW: 20811.4 Da    PI: 5.8799
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010531479.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.52.4e-07433534
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                     C+ +e+  ++lfC  ++  lC++C ++ H
  XP_010531479.1  4 LCDACESTAAILFCAADEAALCHSCDEKVH 33
                    6******99******************998 PP

2zf-B_box27.94.9e-095291237
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                    ++++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  XP_010531479.1 52 DAPRCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrtH 91
                    679***************************9996555556 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.239147IPR000315B-box-type zinc finger
CDDcd000215.43E-6345No hitNo description
SMARTSM003361.3E-5447IPR000315B-box-type zinc finger
PfamPF006431.6E-5442IPR000315B-box-type zinc finger
SMARTSM003361.1E-125196IPR000315B-box-type zinc finger
PROSITE profilePS501199.1015196IPR000315B-box-type zinc finger
PfamPF006435.8E-75291IPR000315B-box-type zinc finger
CDDcd000211.21E-75496No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MRILCDACES TAAILFCAAD EAALCHSCDE KVHMCNKLAS RHVRVGLADP SDAPRCDICE  60
NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR IEFPGDKCGS VGLQGKEQNR  120
ARENPQEPKS NAEPDGKVES KLFDPNANPQ RIHDPASNNQ ERGIDVNNMN NHEPGSLVPV  180
GPFQREPEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010531479.11e-138PREDICTED: B-box zinc finger protein 19-like
SwissprotC0SVM51e-97BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A061E6F99e-96A0A061E6F9_THECC; B-box type zinc finger family protein
TrEMBLD7MFQ52e-96D7MFQ5_ARALL; Zinc finger (B-box type) family protein
STRINGscaffold_700091.15e-96(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.18e-99DBB family protein